Proteome database of Vibrio vulnificus strain YJ016 (doi:10.7910/DVN/XTMGNG)

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Part 1: Document Description
Part 2: Study Description
Part 3: Data Files Description
Part 4: Variable Description
Entire Codebook

Document Description

Citation

Title:

Proteome database of Vibrio vulnificus strain YJ016

Identification Number:

doi:10.7910/DVN/XTMGNG

Distributor:

Harvard Dataverse

Date of Distribution:

2020-12-04

Version:

1

Bibliographic Citation:

Ng, Wenfa, 2020, "Proteome database of Vibrio vulnificus strain YJ016", https://doi.org/10.7910/DVN/XTMGNG, Harvard Dataverse, V1, UNF:6:6ZoBocDMCqkk1UBhAjjhWA== [fileUNF]

Study Description

Citation

Title:

Proteome database of Vibrio vulnificus strain YJ016

Identification Number:

doi:10.7910/DVN/XTMGNG

Authoring Entity:

Ng, Wenfa

Distributor:

Harvard Dataverse

Access Authority:

Ng, Wenfa

Depositor:

Ng, Wenfa

Date of Deposit:

2020-12-04

Holdings Information:

https://doi.org/10.7910/DVN/XTMGNG

Study Scope

Keywords:

Medicine, Health and Life Sciences, Vibrio vulnificus, proteome database, protein name, molecular weight, number of residues

Abstract:

Vibrio vulnificus is a Gram-negative, motile, curved rod-shaped bacterium common in brackish water and marine environment. Able to cause disease, the bacterium is related to the causative agent of chloera, Vibrio cholerae. This work presents the proteome database of V. vulnificus strain YJ016 by parsing its annotated proteome downloaded from UniProt. Comprising protein name, amino acid sequence, number of residues, molecular weight and nucleotide sequence, the resource should be useful for gaining a deeper appreciation of the metabolic capability of the bacterium and its relation to pathogenesis.

Notes:

The author declares no conflicts of interest. No funding was used in this work.

Methodology and Processing

Sources Statement

Data Access

Notes:

<a href="http://creativecommons.org/publicdomain/zero/1.0">CC0 1.0</a>

Other Study Description Materials

File Description--f4204986

File: Proteomedb Vibrio vulnificus Strain YJ016.tab

  • Number of cases: 4990

  • No. of variables per record: 5

  • Type of File: text/tab-separated-values

Notes:

UNF:6:6ZoBocDMCqkk1UBhAjjhWA==

Variable Description

List of Variables:

Variables

Name

f4204986 Location:

Variable Format: character

Notes: UNF:6:2kHumqp+QsNH+JB0FwNPDg==

AASequence

f4204986 Location:

Variable Format: character

Notes: UNF:6:39ZLWaOg7DdQSPD9CM5Eiw==

Noofresidues

f4204986 Location:

Summary Statistics: StDev 248.65564051666672; Valid 4990.0; Min. 34.0; Mean 310.55591182364736; Max. 5206.0

Variable Format: numeric

Notes: UNF:6:a9sxWtiEMyd4OOZU4xqOWA==

Molweight

f4204986 Location:

Summary Statistics: Min. 3709.465000000001; Mean 34577.567460921775; Max. 556205.2849999947; StDev 27389.48460874217; Valid 4990.0;

Variable Format: numeric

Notes: UNF:6:DnyoKy3+qHx6zNkHSZdm0w==

NtSequence

f4204986 Location:

Variable Format: character

Notes: UNF:6:HJRo4pFmvssEZRHOe6npRg==