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Part 1: Document Description
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Citation |
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Title: |
Distinguishing between Nile tilapia strains using a low-density Single Nucleotide Polymorphism (SNPs) panel: Data. |
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Identification Number: |
doi:10.7910/DVN/PPOSWW |
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Distributor: |
Harvard Dataverse |
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Date of Distribution: |
2020-08-12 |
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Version: |
1 |
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Bibliographic Citation: |
Hamilton, Matthew G.; Lind, Curtis E.; Barman, Benoy Kumar; Velasco, R. R.; Danting, J. C.; Benzie, John, 2020, "Distinguishing between Nile tilapia strains using a low-density Single Nucleotide Polymorphism (SNPs) panel: Data.", https://doi.org/10.7910/DVN/PPOSWW, Harvard Dataverse, V1, UNF:6:tEONtx64L9YwoSSZYs3OCw== [fileUNF] |
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Citation |
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Title: |
Distinguishing between Nile tilapia strains using a low-density Single Nucleotide Polymorphism (SNPs) panel: Data. |
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Identification Number: |
doi:10.7910/DVN/PPOSWW |
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Authoring Entity: |
Hamilton, Matthew G. (WorldFish) |
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Lind, Curtis E. (WorldFish; CSIRO Agriculture and Food) |
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Barman, Benoy Kumar (WorldFish) |
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Velasco, R. R. (Department of Aquatic Resources, Ecology and Management, College of Fisheries, Central Luzon State University; Freshwater Aquaculture Center, Central Luzon State University) |
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Danting, J. C. (Bureau of Fisheries and Aquatic Resources, NFFTC, CLSU Compound, Science City of Munoz) |
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Benzie, John (WorldFish) |
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Other identifications and acknowledgements: |
Standing Panel on Impact Assessment (SPIA) |
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Other identifications and acknowledgements: |
CGIAR Research Program on Fish Agri-Food Systems (FISH) |
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Other identifications and acknowledgements: |
CGIAR Trust Fund |
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Other identifications and acknowledgements: |
USAID funded Aquaculture and Nutrition (AIN) project |
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Other identifications and acknowledgements: |
WorldFish |
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Producer: |
WorldFish |
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Date of Production: |
2020-08-12 |
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Distributor: |
Harvard Dataverse |
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Distributor: |
WorldFish |
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Access Authority: |
Hamilton, Matthew |
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Depositor: |
Muliro, Jacquie |
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Date of Deposit: |
2020-08-11 |
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Holdings Information: |
https://doi.org/10.7910/DVN/PPOSWW |
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Study Scope |
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Keywords: |
Medicine, Health and Life Sciences, Genomics, genetic polymorphism, animal breeding, Bangladesh, Oreochromis niloticus, Nile tilapia |
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Abstract: |
DArTseq silicoDArT and Single Nucleotide Polymorphism (SNP) markers (report DTi16-2108) and DArTcap SNP markers (report DTi17-2714_DTi17-2713). A Microsoft Excel file containing i) 21,195 SNP and 27,150 silicoDArT DArTseq genotypes and respective marker sequence and metadata information for 1404 tilipia (Oreochromis niloticus, O. mossambicus and hybrid) core breeding population samples; and ii) 1334 SNP DArTcap genotypes for 2057 Oreochromis niloticus hatchery samples. Corresponding .Rdata files containing genlight objects are also provided |
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Country: |
Bangladesh, Philippines |
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Kind of Data: |
DArTseq silicoDArT and Single Nucleotide Polymorphism (SNP) marker data |
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Methodology and Processing |
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Sources Statement |
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Data Access |
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Disclaimer: |
<P> Whilst utmost care has been taken by WorldFish and data authors while collecting and compiling the data, the data is however offered "as is" with no express or implied warranty. In no event shall the data authors, WorldFish, or relevant funding agencies be liable for any actual, incidental or consequential damages arising from use of the data. <BR/><BR/> By using the WorldFish Dataverse, the user expressly acknowledges that the Data may contain some nonconformities, defects, or errors. No warranty is given that the data will meet the user's needs or expectations or that all nonconformities, defects, or errors can or will be corrected. <BR/><BR/> The user should always verify actual data; therefore the user bears all responsibility in determining whether the data is fit for the user’s intended use. The user of the data should use the related publications as a baseline for their analysis whenever possible. Doing so will be an added safeguard against misinterpretation of the data. Related publications are listed in the metadata section of the Dataverse study. </P> |
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Notes: |
<P><a rel="license" href="http://creativecommons.org/licenses/by/4.0/" target="_blank"><img alt="Creative Commons License" style="border-width:0" src="https://i.creativecommons.org/l/by/4.0/88x31.png" /></a><br /> These data and documents are licensed under a <a href="http://creativecommons.org/licenses/by/4.0/" target="_blank"> Creative Commons Attribution 4.0 International license.</a> You may copy, distribute and transmit the data as long as you acknowledge the source through proper <a href="http://best-practices.dataverse.org/data-citation/" target="_blank">data citation</a>.</P> <Strong>Disclaimer</Strong> <P> Whilst utmost care has been taken by WorldFish and data authors while collecting and compiling the data, the data is however offered "as is" with no express or implied warranty. In no event shall the data authors, WorldFish, or relevant funding agencies be liable for any actual, incidental or consequential damages arising from use of the data. <BR/><BR/> By using the WorldFish Dataverse, the user expressly acknowledges that the Data may contain some nonconformities, defects, or errors. No warranty is given that the data will meet the user's needs or expectations or that all nonconformities, defects, or errors can or will be corrected. <BR/><BR/> The user should always verify actual data; therefore the user bears all responsibility in determining whether the data is fit for the user’s intended use. The user of the data should use the related publications as a baseline for their analysis whenever possible. Doing so will be an added safeguard against misinterpretation of the data. Related publications are listed in the metadata section of the Dataverse study. </P> |
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Other Study Description Materials |
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Other Reference Note(s) |
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When using these data, please cite: Hamilton M, Lind C, Barman B, Velasco R, Danting J, Benzie J (in prep) Distinguishing between Nile tilapia strains using a low-density Single Nucleotide Polymorphism (SNPs) panel. |
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File Description--f4017248 |
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File: Report-DTi16-2108-MetadataDefinitions.tab |
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Notes: |
UNF:6:tEONtx64L9YwoSSZYs3OCw== |
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Label: |
Hamilton et al (2020) Nile tilapia strains genlight DArTcap.rdata |
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Notes: |
application/gzip |
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Label: |
Hamilton et al (2020) Nile tilapia strains genlight DArTseq.rdata |
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Notes: |
application/gzip |
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Label: |
Hamilton et al (2020) Nile tilapia strains.xlsx |
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Notes: |
application/vnd.openxmlformats-officedocument.spreadsheetml.sheet |
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Label: |
metadata_DTi17-2713.xlsx |
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Notes: |
application/vnd.openxmlformats-officedocument.spreadsheetml.sheet |
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Label: |
metadata_DTi17-2714.xlsx |
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Notes: |
application/vnd.openxmlformats-officedocument.spreadsheetml.sheet |
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Label: |
Report-DTi16-2108-silico.csv |
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Notes: |
text/csv |
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Label: |
Report-DTi16-2108-snp.csv |
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Notes: |
text/csv |
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Label: |
Report_DTi17-2714_DTi17-2713_SNP_singlerow_1.csv |
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Notes: |
text/csv |