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Part 1: Document Description
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Citation |
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Title: |
Bacterial and fungal metabarcoding data characterizing within-canopy and within-leaf microbiota variations of three beech trees (Fagus Sylvatica) and their surrounding environment during the vegetative season of 2017. |
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Identification Number: |
doi:10.7910/DVN/FFHAQU |
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Distributor: |
Harvard Dataverse |
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Date of Distribution: |
2022-05-26 |
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Version: |
1 |
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Bibliographic Citation: |
Fort, Tania; Pauvert, Charlie; Chancerel, Emilie; Burlett, Regis; Wingate, Lisa; Vacher, Corinne, 2022, "Bacterial and fungal metabarcoding data characterizing within-canopy and within-leaf microbiota variations of three beech trees (Fagus Sylvatica) and their surrounding environment during the vegetative season of 2017.", https://doi.org/10.7910/DVN/FFHAQU, Harvard Dataverse, V1, UNF:6:w6ip/2IwCi+4+eLORVtjDg== [fileUNF] |
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Citation |
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Title: |
Bacterial and fungal metabarcoding data characterizing within-canopy and within-leaf microbiota variations of three beech trees (Fagus Sylvatica) and their surrounding environment during the vegetative season of 2017. |
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Identification Number: |
doi:10.7910/DVN/FFHAQU |
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Authoring Entity: |
Fort, Tania (Institute of microbiology of the Czech Academy of Sciences) |
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Pauvert, Charlie (Uniklinik RWTH Aachen) |
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Chancerel, Emilie (Institut national de recherche pour l'agriculture, l'alimentation et l'environnement) |
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Burlett, Regis (Institut national de recherche pour l'agriculture, l'alimentation et l'environnement) |
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Wingate, Lisa (Institut national de recherche pour l'agriculture, l'alimentation et l'environnement) |
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Vacher, Corinne (Institut national de recherche pour l'agriculture, l'alimentation et l'environnement) |
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Distributor: |
Harvard Dataverse |
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Access Authority: |
Fort, Tania |
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Depositor: |
Fort, Tania |
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Date of Deposit: |
2022-05-26 |
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Holdings Information: |
https://doi.org/10.7910/DVN/FFHAQU |
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Study Scope |
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Keywords: |
Earth and Environmental Sciences, Microbial ecology |
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Abstract: |
The dataset was created to quantify the magnitude of within-leaf and wihtin-canopy variations in the phyllosphere bacterial and fungal communities in european beech and the impact of such variations on microbial succession during leaf decomposition. The dataset is composed of FASTA files, Amplicon Sequence Variant (ASV) tables, the R code to generate ASV tables from raw sequences and the metadata including description of samples collected (geographic location, dates, trees, canopy and leaf position of the samples). |
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Methodology and Processing |
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Sources Statement |
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Data Access |
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Other Study Description Materials |
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File Description--f6310162 |
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File: metadata_16S_R1.tab |
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Notes: |
UNF:6:rystHBM9Xu+1zlN4U11Lrw== |
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File Description--f6310177 |
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File: metadata_16S_R2.tab |
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Notes: |
UNF:6:hEutbeGtfL560ME9+Nb+Fg== |
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File Description--f6310165 |
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File: metadata_ITS_R3.tab |
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Notes: |
UNF:6:sBU9o+2LbHxZDnuo5NHhcg== |
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File Description--f6310164 |
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File: metadata_ITS_R4.tab |
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Notes: |
UNF:6:O9mlIfEAgwfiFRSCoCC4gA== |
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List of Variables: |
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Variables |
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Sample_name;Tree;Position_branch;Tot_height;dist_river;Branch_height;Dist_trunk;Angle_trunk;Date;Height;Level;SD_aft_filter;SD_bf_filter |
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f6310162 Location: |
Variable Format: character Notes: UNF:6:rystHBM9Xu+1zlN4U11Lrw== |
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Sample_name;Sample_type;Tissue_type;Date;Tree;Position;Tot_height;dist_river;Branch_height;Dist_trunk;Angle_trunk;Height;Level;SD_aft_filter;SD_bf_filter |
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f6310177 Location: |
Variable Format: character Notes: UNF:6:hEutbeGtfL560ME9+Nb+Fg== |
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Sample_name;Tree;Position_branch;Tot_height;dist_river;Branch_height;Dist_trunk;Angle_trunk;Date;Height;Level;SD_aft_filter;SD_bf_filter |
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f6310165 Location: |
Variable Format: character Notes: UNF:6:sBU9o+2LbHxZDnuo5NHhcg== |
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Sample_name;Sample_type;Tissue_type;Date;Tree;Position;Tot_height;dist_river;Branch_height;Dist_trunk;Angle_trunk;Height;Level;SD_aft_filter;SD_bf_filter |
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f6310164 Location: |
Variable Format: character Notes: UNF:6:O9mlIfEAgwfiFRSCoCC4gA== |
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Label: |
AFS_R_script_datastructure.Rmd |
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Notes: |
application/octet-stream |
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Label: |
ASV.seq.16S1.fasta |
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Notes: |
application/octet-stream |
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Label: |
ASV.seq.16S2.fasta |
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Notes: |
application/octet-stream |
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Label: |
ASV.seq.ITS3.fasta |
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Notes: |
application/octet-stream |
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Label: |
ASV.seq.ITS4.fasta |
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Notes: |
application/octet-stream |
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Label: |
ASV_tables_16S_R1.csv |
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Notes: |
text/csv |
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Label: |
ASV_tables_16S_R2.csv |
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Notes: |
text/csv |
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Label: |
ASV_tables_ITS_R3.csv |
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Notes: |
text/csv |
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Label: |
ASV_tables_ITS_R4.csv |
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Notes: |
text/csv |
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Label: |
Pipeline_16S_Run1.Rmd |
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Notes: |
application/octet-stream |
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Label: |
Pipeline_16S_Run2.Rmd |
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Notes: |
application/octet-stream |
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Label: |
Pipeline_ITS_Run3.Rmd |
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Notes: |
application/octet-stream |
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Label: |
Pipeline_ITS_Run4.Rmd |
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Notes: |
application/octet-stream |