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Part 1: Document Description
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Citation |
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Title: |
Proteome database of Shewanella putrefaciens ATCC BAA-453 |
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Identification Number: |
doi:10.7910/DVN/71ELYX |
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Distributor: |
Harvard Dataverse |
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Date of Distribution: |
2020-11-18 |
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Version: |
1 |
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Bibliographic Citation: |
Ng, Wenfa, 2020, "Proteome database of Shewanella putrefaciens ATCC BAA-453", https://doi.org/10.7910/DVN/71ELYX, Harvard Dataverse, V1, UNF:6:lUt21etE6xuPYWcrOXNK5w== [fileUNF] |
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Citation |
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Title: |
Proteome database of Shewanella putrefaciens ATCC BAA-453 |
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Identification Number: |
doi:10.7910/DVN/71ELYX |
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Authoring Entity: |
Ng, Wenfa |
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Distributor: |
Harvard Dataverse |
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Access Authority: |
Ng, Wenfa |
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Depositor: |
Ng, Wenfa |
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Date of Deposit: |
2020-11-18 |
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Holdings Information: |
https://doi.org/10.7910/DVN/71ELYX |
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Study Scope |
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Keywords: |
Earth and Environmental Sciences, Medicine, Health and Life Sciences, Shewanella putrefaciens, proteome database, protein name, number of residues, molecular weight |
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Abstract: |
Shewanella putrefaciens is a Gram-negative, facultative anaerobic bacterium capable of using iron and manganese as terminal electron acceptors in the electron transport chain. More importantly, the bacterium is endowed with cell surface appendages that reduce metals and metalloids to lower oxidation state; thereby, potentiating the bacterium’s relevance in biomineralization and bioremediation. This work presents the proteome database of S. putrefaciens ATCC BAA-453 by parsing its annotated proteome downloaded from UniProt. Comprising protein name, amino acid sequence, number of residues, molecular weight, and nucleotide sequence of each protein in the proteome, the resource should find use in environmental biotechnology seeking to understand the molecular genetic mechanisms that underpin the bacterium’s capability at reducing metals and metalloids. |
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Notes: |
The author declares no conflicts of interest. No funding was used in this work. |
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Methodology and Processing |
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Sources Statement |
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Data Access |
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Notes: |
<a href="http://creativecommons.org/publicdomain/zero/1.0">CC0 1.0</a> |
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Other Study Description Materials |
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File Description--f4178043 |
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File: Proteomedb Shewanella putrefaciens ATCC BAA-453.tab |
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Notes: |
UNF:6:lUt21etE6xuPYWcrOXNK5w== |
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List of Variables: |
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Variables |
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f4178043 Location: |
Variable Format: character Notes: UNF:6:UwO2GAPS0Cj7yX2I9rV7Xg== |
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f4178043 Location: |
Variable Format: character Notes: UNF:6:kIkq/r9nnq0n6uQ7kM4gPg== |
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f4178043 Location: |
Summary Statistics: Mean 333.8087639311042; StDev 241.74899753706674; Max. 4220.0; Valid 3948.0; Min. 30.0 Variable Format: numeric Notes: UNF:6:YNngPt+yd9YniXl1kX65Aw== |
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f4178043 Location: |
Summary Statistics: Max. 428771.0750000045; StDev 26505.649682325686; Min. 3101.615000000001; Valid 3948.0; Mean 36955.02496833832 Variable Format: numeric Notes: UNF:6:njx4txd87Juibuz2WLudRg== |
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f4178043 Location: |
Variable Format: character Notes: UNF:6:d9NMGhiXhG1d6Lp8pyGgjQ== |