Replication Data for: Dynamic vs. static social networks in models of parasite transmission: Predicting Cryptosporidium spread in wild lemursdoi:10.7910/DVN/OU5RKQHarvard Dataverse2016-11-291Springer, Andrea; Kappeler, Peter M.; Nunn, Charles L., 2016, "Replication Data for: Dynamic vs. static social networks in models of parasite transmission: Predicting Cryptosporidium spread in wild lemurs", https://doi.org/10.7910/DVN/OU5RKQ, Harvard Dataverse, V1, UNF:6:8Z/8qsEtlNOe7vc0d++osw== [fileUNF]Replication Data for: Dynamic vs. static social networks in models of parasite transmission: Predicting Cryptosporidium spread in wild lemursdoi:10.7910/DVN/OU5RKQSpringer, AndreaKappeler, Peter M. Nunn, Charles L.Harvard DataverseSpringer, AndreaSpringer, Andrea2016-11-28Earth and Environmental SciencesEpidemiological modelingSocial networksCryptosporidiumThis dataset contains the R codes, model input data and model output necessary to reproduce the analyses persented in "Dynamic vs. static social networks in models of parasite transmission: Predicting Cryptosporidium spread in wild lemurs".<a href="http://creativecommons.org/publicdomain/zero/1.0">CC0 1.0</a>2weekly_home_range_sizes_dry.tab85text/tab-separated-valuesUNF:6:wxNTknwcj8m1hyFPU9TKQQ==Home range sizes (in hectare) of 8 groups of Verreaux’s sifakas, for each of 5 two-weekly intervals in the dry season. HR = home range Group = resident group in this home range HR_size = size of the entire home range (95 % kernel) in hectare Core_area = size of the core area (50 % kernel) in hectare Non_core = HR_size – core_area HR_size_mean = mean size of the entire home range (95 % kernel) over the dry / wet season Core_area_mean = mean size of core area (50 % kernel) over the dry / wet season Non_core_mean = HR_size_mean – core_area_mean 2weekly_home_range_sizes_wet.tab85text/tab-separated-valuesUNF:6:1FuBV6sArMFXI2g5puQtYA==Home range sizes (in hectare) of 8 groups of Verreaux’s sifakas, for each of 5 two-weekly intervals in the wet season. HR = home range Group = resident group in this home range HR_size = size of the entire home range (95 % kernel) in hectare Core_area = size of the core area (50 % kernel) in hectare Non_core = HR_size – core_area HR_size_mean = mean size of the entire home range (95 % kernel) over the dry / wet season Core_area_mean = mean size of core area (50 % kernel) over the dry / wet season Non_core_mean = HR_size_mean – core_area_meandynamic_environmental_spread_only_dry_season.tab100016text/tab-separated-valuesUNF:6:XQGY/CxF841o+CDskMzR7g==Table containing parameter combinations used as well as output of the dynamic, dry season version of the Cryptosporidium model, including environmental transmission only. Inc_period = incubation period Beta_x = transmission parameter beta for animals < 1 year of age and direct contact transmission Beta_y = transmission parameter beta for animals between 1-5 years of age and direct contact transmission Beta_z = transmission parameter beta for animals >5 years of age and direct contact transmission Beta_env_x = transmission parameter beta for animals < 1 year of age and environmental transmission Beta_env_y = transmission parameter beta for animals between 1-5 years of age and environmental transmission Beta_env_z = transmission parameter beta for animals >5 years of age and environmental transmission Gamma_x/Gamma_y/Gamma_z = Probability of recovery for animals < 1 year, 1-5 years and >5 years of age, respectively Alpha_x/Alpha_y/Alpha_z = Probability of dying from the disease for animals < 1 year, 1-5 years and >5 years of age, respectively Half_life = Half-life of Cryptosporidium oocysts in the environment Outbreak_size = sum of animals that had been infected until day 70 of the simulation Groups_affected = number of groups that had been infected by the pathogen until day 70 of the simulation Deaths = number of deaths that occurred until day 70 of the simulation Indexcase = first animals infected in the simulation dynamic_environmental_spread_only_wet_season.tab100016text/tab-separated-valuesUNF:6:RqI4Bui6BHJdjwQP6Zt0Ng==Table containing parameter combinations used as well as output of the dynamic, wet season version of the Cryptosporidium model, including environmental transmission only. Inc_period = incubation period Beta_x = transmission parameter beta for animals < 1 year of age and direct contact transmission Beta_y = transmission parameter beta for animals between 1-5 years of age and direct contact transmission Beta_z = transmission parameter beta for animals >5 years of age and direct contact transmission Beta_env_x = transmission parameter beta for animals < 1 year of age and environmental transmission Beta_env_y = transmission parameter beta for animals between 1-5 years of age and environmental transmission Beta_env_z = transmission parameter beta for animals >5 years of age and environmental transmission Gamma_x/Gamma_y/Gamma_z = Probability of recovery for animals < 1 year, 1-5 years and >5 years of age, respectively Alpha_x/Alpha_y/Alpha_z = Probability of dying from the disease for animals < 1 year, 1-5 years and >5 years of age, respectively Half_life = Half-life of Cryptosporidium oocysts in the environment Outbreak_size = sum of animals that had been infected until day 70 of the simulation Groups_affected = number of groups that had been infected by the pathogen until day 70 of the simulation Deaths = number of deaths that occurred until day 70 of the simulation Indexcase = first animals infected in the simulation dynamic_social_spread_only_dry_season.tab100016text/tab-separated-valuesUNF:6:vLBsdPdjRPtZ/2tBZCGwaQ==Table containing parameter combinations used as well as output of the dynamic, dry season version of the Cryptosporidium model, including direct contact transmission only. Inc_period = incubation period Beta_x = transmission parameter beta for animals < 1 year of age and direct contact transmission Beta_y = transmission parameter beta for animals between 1-5 years of age and direct contact transmission Beta_z = transmission parameter beta for animals >5 years of age and direct contact transmission Beta_env_x = transmission parameter beta for animals < 1 year of age and environmental transmission Beta_env_y = transmission parameter beta for animals between 1-5 years of age and environmental transmission Beta_env_z = transmission parameter beta for animals >5 years of age and environmental transmission Gamma_x/Gamma_y/Gamma_z = Probability of recovery for animals < 1 year, 1-5 years and >5 years of age, respectively Alpha_x/Alpha_y/Alpha_z = Probability of dying from the disease for animals < 1 year, 1-5 years and >5 years of age, respectively Half_life = Half-life of Cryptosporidium oocysts in the environment Outbreak_size = sum of animals that had been infected until day 70 of the simulation Groups_affected = number of groups that had been infected by the pathogen until day 70 of the simulation Deaths = number of deaths that occurred until day 70 of the simulation Indexcase = first animals infected in the simulationdynamic_social_spread_only_wet_season.tab100016text/tab-separated-valuesUNF:6:7oQbcGze08fEA8rfDmJhFw==Table containing parameter combinations used as well as output of the dynamic, wet season version of the Cryptosporidium model, including direct contact transmission only. Inc_period = incubation period Beta_x = transmission parameter beta for animals < 1 year of age and direct contact transmission Beta_y = transmission parameter beta for animals between 1-5 years of age and direct contact transmission Beta_z = transmission parameter beta for animals >5 years of age and direct contact transmission Beta_env_x = transmission parameter beta for animals < 1 year of age and environmental transmission Beta_env_y = transmission parameter beta for animals between 1-5 years of age and environmental transmission Beta_env_z = transmission parameter beta for animals >5 years of age and environmental transmission Gamma_x/Gamma_y/Gamma_z = Probability of recovery for animals < 1 year, 1-5 years and >5 years of age, respectively Alpha_x/Alpha_y/Alpha_z = Probability of dying from the disease for animals < 1 year, 1-5 years and >5 years of age, respectively Half_life = Half-life of Cryptosporidium oocysts in the environment Outbreak_size = sum of animals that had been infected until day 70 of the simulation Groups_affected = number of groups that had been infected by the pathogen until day 70 of the simulation Deaths = number of deaths that occurred until day 70 of the simulation Indexcase = first animals infected in the simulationfull_dynamic_dry_season.tab100019text/tab-separated-valuesUNF:6:mCEwCAaL+TUIqlFVZpMOyA==Table containing parameter combinations used as well as output of the dynamic Cryptosporidium model version including both social and environmental transmission, for the dry season. Inc_period = incubation period Beta_x = transmission parameter beta for animals < 1 year of age and direct contact transmission Beta_y = transmission parameter beta for animals between 1-5 years of age and direct contact transmission Beta_z = transmission parameter beta for animals >5 years of age and direct contact transmission Beta_env_x = transmission parameter beta for animals < 1 year of age and environmental transmission Beta_env_y = transmission parameter beta for animals between 1-5 years of age and environmental transmission Beta_env_z = transmission parameter beta for animals >5 years of age and environmental transmission Gamma_x/Gamma_y/Gamma_z = Probability of recovery for animals < 1 year, 1-5 years and >5 years of age, respectively Alpha_x/Alpha_y/Alpha_z = Probability of dying from the disease for animals < 1 year, 1-5 years and >5 years of age, respectively Half_life = Half-life of Cryptosporidium oocysts in the environment Outbreak_size = sum of animals that had been infected until day 70 of the simulation Groups_affected = number of groups that had been infected by the pathogen until day 70 of the simulation Deaths = number of deaths that occurred until day 70 of the simulation Indexcase = first animals infected in the simulationfull_dynamic_wet_season.tab100019text/tab-separated-valuesUNF:6:5Kn8fqvWrxSQLEeop8IgPg==Table containing parameter combinations used as well as output of the dynamic Cryptosporidium model version including both social and environmental transmission, for the wet season. Inc_period = incubation period Beta_x = transmission parameter beta for animals < 1 year of age and direct contact transmission Beta_y = transmission parameter beta for animals between 1-5 years of age and direct contact transmission Beta_z = transmission parameter beta for animals >5 years of age and direct contact transmission Beta_env_x = transmission parameter beta for animals < 1 year of age and environmental transmission Beta_env_y = transmission parameter beta for animals between 1-5 years of age and environmental transmission Beta_env_z = transmission parameter beta for animals >5 years of age and environmental transmission Gamma_x/Gamma_y/Gamma_z = Probability of recovery for animals < 1 year, 1-5 years and >5 years of age, respectively Alpha_x/Alpha_y/Alpha_z = Probability of dying from the disease for animals < 1 year, 1-5 years and >5 years of age, respectively Half_life = Half-life of Cryptosporidium oocysts in the environment Outbreak_size = sum of animals that had been infected until day 70 of the simulation Groups_affected = number of groups that had been infected by the pathogen until day 70 of the simulation Deaths = number of deaths that occurred until day 70 of the simulation Indexcase = first animals infected in the simulationfull_static_dry_season.tab100019text/tab-separated-valuesUNF:6:3ESq3VK4sNpmQ8Wwm4+DcA==Table containing parameter combinations used as well as output of the static Cryptosporidium model version including both social and environmental transmission, for the dry season. Inc_period = incubation period Beta_x = transmission parameter beta for animals < 1 year of age and direct contact transmission Beta_y = transmission parameter beta for animals between 1-5 years of age and direct contact transmission Beta_z = transmission parameter beta for animals >5 years of age and direct contact transmission Beta_env_x = transmission parameter beta for animals < 1 year of age and environmental transmission Beta_env_y = transmission parameter beta for animals between 1-5 years of age and environmental transmission Beta_env_z = transmission parameter beta for animals >5 years of age and environmental transmission Gamma_x/Gamma_y/Gamma_z = Probability of recovery for animals < 1 year, 1-5 years and >5 years of age, respectively Alpha_x/Alpha_y/Alpha_z = Probability of dying from the disease for animals < 1 year, 1-5 years and >5 years of age, respectively Half_life = Half-life of Cryptosporidium oocysts in the environment Outbreak_size = sum of animals that had been infected until day 70 of the simulation Groups_affected = number of groups that had been infected by the pathogen until day 70 of the simulation Deaths = number of deaths that occurred until day 70 of the simulation Indexcase = first animals infected in the simulation full_static_wet_season.tab100019text/tab-separated-valuesUNF:6:j/aPFLGFRwggzlA1eDu+JA==Table containing parameter combinations used as well as output of the static Cryptosporidium model version including both social and environmental transmission, for the wet season. Inc_period = incubation period Beta_x = transmission parameter beta for animals < 1 year of age and direct contact transmission Beta_y = transmission parameter beta for animals between 1-5 years of age and direct contact transmission Beta_z = transmission parameter beta for animals >5 years of age and direct contact transmission Beta_env_x = transmission parameter beta for animals < 1 year of age and environmental transmission Beta_env_y = transmission parameter beta for animals between 1-5 years of age and environmental transmission Beta_env_z = transmission parameter beta for animals >5 years of age and environmental transmission Gamma_x/Gamma_y/Gamma_z = Probability of recovery for animals < 1 year, 1-5 years and >5 years of age, respectively Alpha_x/Alpha_y/Alpha_z = Probability of dying from the disease for animals < 1 year, 1-5 years and >5 years of age, respectively Half_life = Half-life of Cryptosporidium oocysts in the environment Outbreak_size = sum of animals that had been infected until day 70 of the simulation Groups_affected = number of groups that had been infected by the pathogen until day 70 of the simulation Deaths = number of deaths that occurred until day 70 of the simulation Indexcase = first animals infected in the simulationHome_range_overlap_dry_2weekly.tab99text/tab-separated-valuesUNF:6:UIcUDye6TMJsHFdlLMJ0gA==Matrices of home range overlap (expressed as Utilization Distribution Overlap Index) between 8 groups of Verreaux’s sifakas, for each of 5 two-weekly intervals in the dry season.Home_range_overlap_dry_static.tab89text/tab-separated-valuesUNF:6:OmKccbJT51A/MGRYr5RokQ==Static version of Utilization Distibution Overlap Index network between 8 Verreaux's sifaka groups, values averaged over the dry season.Home_range_overlap_wet_2weekly.tab89text/tab-separated-valuesUNF:6:ifbiOQOr0axRpkHd6c93FA==Matrices of home range overlap (expressed as Utilization Distribution Overlap Index) between 8 groups of Verreaux’s sifakas, for each of 5 two-weekly intervals in the wet season.Home_range_overlap_wet_static.tab89text/tab-separated-valuesUNF:6:dO9NdlPWpnvZyvI5HIR38Q==Static version of Utilization Distibution Overlap Index network between 8 Verreaux's sifaka groups, values averaged over the wet season.list_of_individuals_dry_season.tab364text/tab-separated-valuesUNF:6:C57XcKxl4HOGsZtuI8R05w==A list of individual Verreaux’s sifakas present in the dry season, their membership in each of eight groups, and their age class (1 = < 1 year, 2 = 1-5 years, 3 = > 5 years of age) as well as their infection status (which will be updated throughout the model simulations).list_of_individuals_wet_season.tab384text/tab-separated-valuesUNF:6:M+ofgDLyoFQtc9G2UMWnuA==A list of individual Verreaux’s sifakas present in the wet season, their membership in each of eight groups, and their age class (1 = < 1 year, 2 = 1-5 years, 3 = > 5 years of age) as well as their infection status (which will be updated throughout the model simulations).Simulated_networks_model_dynamic_beta_gamma_constant1.tab10008text/tab-separated-valuesUNF:6:zrVOqDBXz8UxByPUXrgDYA==Table containing parameters used, network characteristics and output for the dynamic model based on simulated networks, for simulations with beta and gamma held constant. N = length of the network sample used in each simulation Intergroup_weight = weight assigned to intergroup connections Beta = transmission probability Gamma = probability of recovery Rewiring_rel = relative frequency of rewiring in the dynamic version of the simulations Mean_outbreak_size = mean relative outbreak size of the 30 simulations (proportion) Range_weights = range of mean tie weights in the dynamic version of the simulations Simulated_networks_model_dynamic_beta_gamma_constant2.tab10009text/tab-separated-valuesUNF:6:PqDS2+pVlfB0NRTHfXi8FA==Table containing parameters used, network characteristics and output for the dynamic model based on simulated networks, for simulations with beta and gamma held constant. N = length of the network sample used in each simulation Intergroup_weight = weight assigned to intergroup connections Beta = transmission probability Gamma = probability of recovery Rewiring_rel = relative frequency of rewiring in the dynamic version of the simulations Mean_outbreak_size = mean relative outbreak size of the 30 simulations (proportion) Range_weights = range of mean tie weights in the dynamic version of the simulationsSimulated_networks_model_dynamic_beta_gamma_constant3.tab10009text/tab-separated-valuesUNF:6:LhAOhgmL+p9TsFh9ZDoSYA==Table containing parameters used, network characteristics and output for the dynamic model based on simulated networks, for simulations with beta and gamma held constant. N = length of the network sample used in each simulation Intergroup_weight = weight assigned to intergroup connections Beta = transmission probability Gamma = probability of recovery Rewiring_rel = relative frequency of rewiring in the dynamic version of the simulations Mean_outbreak_size = mean relative outbreak size of the 30 simulations (proportion) Range_weights = range of mean tie weights in the dynamic version of the simulationsSimulated_networks_model_dynamic_beta_gamma_constant4.tab10009text/tab-separated-valuesUNF:6:po+4qfi+oM9f+i9E2o5a5g==Table containing parameters used, network characteristics and output for the dynamic model based on simulated networks, for simulations with beta and gamma held constant. N = length of the network sample used in each simulation Intergroup_weight = weight assigned to intergroup connections Beta = transmission probability Gamma = probability of recovery Rewiring_rel = relative frequency of rewiring in the dynamic version of the simulations Mean_outbreak_size = mean relative outbreak size of the 30 simulations (proportion) Range_weights = range of mean tie weights in the dynamic version of the simulationsSimulated_networks_model_dynamic_beta_gamma_constant5.tab10009text/tab-separated-valuesUNF:6:W76D8kWlmS/GA+1FDLi4dQ==Table containing parameters used, network characteristics and output for the dynamic model based on simulated networks, for simulations with beta and gamma held constant. N = length of the network sample used in each simulation Intergroup_weight = weight assigned to intergroup connections Beta = transmission probability Gamma = probability of recovery Rewiring_rel = relative frequency of rewiring in the dynamic version of the simulations Mean_outbreak_size = mean relative outbreak size of the 30 simulations (proportion) Range_weights = range of mean tie weights in the dynamic version of the simulationsSimulated_networks_model_dynamic_beta_gamma_constant6.tab10009text/tab-separated-valuesUNF:6:A8JH4NRB7jsmVjEqBFqXDA==Table containing parameters used, network characteristics and output for the dynamic model based on simulated networks, for simulations with beta and gamma held constant. N = length of the network sample used in each simulation Intergroup_weight = weight assigned to intergroup connections Beta = transmission probability Gamma = probability of recovery Rewiring_rel = relative frequency of rewiring in the dynamic version of the simulations Mean_outbreak_size = mean relative outbreak size of the 30 simulations (proportion) Range_weights = range of mean tie weights in the dynamic version of the simulationsSimulated_networks_model_dynamic_beta_gamma_constant7.tab10009text/tab-separated-valuesUNF:6:VQIQ5FaeBSIwunAR8/pFZQ==Table containing parameters used, network characteristics and output for the dynamic model based on simulated networks, for simulations with beta and gamma held constant. N = length of the network sample used in each simulation Intergroup_weight = weight assigned to intergroup connections Beta = transmission probability Gamma = probability of recovery Rewiring_rel = relative frequency of rewiring in the dynamic version of the simulations Mean_outbreak_size = mean relative outbreak size of the 30 simulations (proportion) Range_weights = range of mean tie weights in the dynamic version of the simulationsSimulated_networks_model_dynamic_beta_gamma_constant8.tab10009text/tab-separated-valuesUNF:6:ZIeP5NeenA8b1+r79n+9gw==Table containing parameters used, network characteristics and output for the dynamic model based on simulated networks, for simulations with beta and gamma held constant. N = length of the network sample used in each simulation Intergroup_weight = weight assigned to intergroup connections Beta = transmission probability Gamma = probability of recovery Rewiring_rel = relative frequency of rewiring in the dynamic version of the simulations Mean_outbreak_size = mean relative outbreak size of the 30 simulations (proportion) Range_weights = range of mean tie weights in the dynamic version of the simulationsSimulated_networks_model_dynamic_beta_gamma_constant9.tab10009text/tab-separated-valuesUNF:6:6T+EtIQrz6idvtajIMas6w==Table containing parameters used, network characteristics and output for the dynamic model based on simulated networks, for simulations with beta and gamma held constant. N = length of the network sample used in each simulation Intergroup_weight = weight assigned to intergroup connections Beta = transmission probability Gamma = probability of recovery Rewiring_rel = relative frequency of rewiring in the dynamic version of the simulations Mean_outbreak_size = mean relative outbreak size of the 30 simulations (proportion) Range_weights = range of mean tie weights in the dynamic version of the simulationsSimulated_networks_model_full_param_ranges.tab100013text/tab-separated-valuesUNF:6:p1fNEtpebRstx1jJSaaQMQ==Table containing parameters used, network characteristics and model output for the model based on simulated networks, for simulations exploring the full range of parameters N = length of the network sample used in each simulation Intergroup_weight = weight assigned to intergroup connections Beta = transmission probability Gamma = probability of recovery Rewiring_rel = relative frequency of rewiring in the dynamic version of the simulations Range_weights = range of mean tie weights in the dynamic version of the simulations Mean_outbreak_sizeD = mean relative outbreak size of the 30 simulations based on dynamic networks (proportion) Mean_outbreak_sizeS = mean relative outbreak size of the 30 simulations based on the static network (proportion) Stat_density = Density of the static network Stat_mod = Modularity of the static network Mean_tie_strengthS = mean tie strength of the static network Delta_mean_outbr_size = Mean_outbreak_sizeS - Mean_outbreak_sizeD Simulated_networks_model_static_beta_gamma_constant1.tab10009text/tab-separated-valuesUNF:6:8b0fTZTVwYAc/RfdEi7k8A==Table containing parameters used, network characteristics and output for the static model based on simulated networks, for simulations with beta and gamma held constant. N = length of the network sample used in each simulation Intergroup_weight = weight assigned to intergroup connections Beta = transmission probability Gamma = probability of recovery Mean_outbreak_size = mean relative outbreak size density = Density of the static network modularity = Modularity of the static network Mean_tie_strength = mean tie strength of the networkSimulated_networks_model_static_beta_gamma_constant2.tab10009text/tab-separated-valuesUNF:6:BYTW25BFk4h2mck81nmeaQ==Table containing parameters used, network characteristics and output for the static model based on simulated networks, for simulations with beta and gamma held constant. N = length of the network sample used in each simulation Intergroup_weight = weight assigned to intergroup connections Beta = transmission probability Gamma = probability of recovery Mean_outbreak_size = mean relative outbreak size density = Density of the static network modularity = Modularity of the static network Mean_tie_strength = mean tie strength of the networkSimulated_networks_model_static_beta_gamma_constant3.tab10009text/tab-separated-valuesUNF:6:n6d6G2gu79QRLddOmSCP3A==Table containing parameters used, network characteristics and output for the static model based on simulated networks, for simulations with beta and gamma held constant. N = length of the network sample used in each simulation Intergroup_weight = weight assigned to intergroup connections Beta = transmission probability Gamma = probability of recovery Mean_outbreak_size = mean relative outbreak size density = Density of the static network modularity = Modularity of the static network Mean_tie_strength = mean tie strength of the networkSimulated_networks_model_static_beta_gamma_constant4.tab10009text/tab-separated-valuesUNF:6:8mNjk4pOj7XYZc1U/dna8g==Table containing parameters used, network characteristics and output for the static model based on simulated networks, for simulations with beta and gamma held constant. N = length of the network sample used in each simulation Intergroup_weight = weight assigned to intergroup connections Beta = transmission probability Gamma = probability of recovery Mean_outbreak_size = mean relative outbreak size density = Density of the static network modularity = Modularity of the static network Mean_tie_strength = mean tie strength of the networkSimulated_networks_model_static_beta_gamma_constant5.tab10009text/tab-separated-valuesUNF:6:P6J9bbsd8xlM4ivBs4tKXw==Table containing parameters used, network characteristics and output for the static model based on simulated networks, for simulations with beta and gamma held constant. N = length of the network sample used in each simulation Intergroup_weight = weight assigned to intergroup connections Beta = transmission probability Gamma = probability of recovery Mean_outbreak_size = mean relative outbreak size density = Density of the static network modularity = Modularity of the static network Mean_tie_strength = mean tie strength of the networkSimulated_networks_model_static_beta_gamma_constant6.tab10009text/tab-separated-valuesUNF:6:+PEJ33jBVAGPN/QTMrLODw==Table containing parameters used, network characteristics and output for the static model based on simulated networks, for simulations with beta and gamma held constant. N = length of the network sample used in each simulation Intergroup_weight = weight assigned to intergroup connections Beta = transmission probability Gamma = probability of recovery Mean_outbreak_size = mean relative outbreak size density = Density of the static network modularity = Modularity of the static network Mean_tie_strength = mean tie strength of the networkSimulated_networks_model_static_beta_gamma_constant7.tab10009text/tab-separated-valuesUNF:6:kjwKFSlgzi2ktVUuXLC0JQ==Table containing parameters used, network characteristics and output for the static model based on simulated networks, for simulations with beta and gamma held constant. N = length of the network sample used in each simulation Intergroup_weight = weight assigned to intergroup connections Beta = transmission probability Gamma = probability of recovery Mean_outbreak_size = mean relative outbreak size density = Density of the static network modularity = Modularity of the static network Mean_tie_strength = mean tie strength of the networkSimulated_networks_model_static_beta_gamma_constant8.tab10009text/tab-separated-valuesUNF:6:H82zpN+4gp90Ju/EQvLApQ==Table containing parameters used, network characteristics and output for the static model based on simulated networks, for simulations with beta and gamma held constant. N = length of the network sample used in each simulation Intergroup_weight = weight assigned to intergroup connections Beta = transmission probability Gamma = probability of recovery Mean_outbreak_size = mean relative outbreak size density = Density of the static network modularity = Modularity of the static network Mean_tie_strength = mean tie strength of the networkSimulated_networks_model_static_beta_gamma_constant9.tab10009text/tab-separated-valuesUNF:6:uNTmGGVsupv439xoqw2s+g==Table containing parameters used, network characteristics and output for the static model based on simulated networks, for simulations with beta and gamma held constant. N = length of the network sample used in each simulation Intergroup_weight = weight assigned to intergroup connections Beta = transmission probability Gamma = probability of recovery Mean_outbreak_size = mean relative outbreak size density = Density of the static network modularity = Modularity of the static network Mean_tie_strength = mean tie strength of the networkstatic_environmental_spread_only_dry_season.tab100016text/tab-separated-valuesUNF:6:qfjyI/SCFxIYMK1IOLS8lA==Table containing parameter combinations used as well as output of the static Cryptosporidium model version including only environmental transmission, for the dry season. Inc_period = incubation period Beta_x = transmission parameter beta for animals < 1 year of age and direct contact transmission Beta_y = transmission parameter beta for animals between 1-5 years of age and direct contact transmission Beta_z = transmission parameter beta for animals >5 years of age and direct contact transmission Beta_env_x = transmission parameter beta for animals < 1 year of age and environmental transmission Beta_env_y = transmission parameter beta for animals between 1-5 years of age and environmental transmission Beta_env_z = transmission parameter beta for animals >5 years of age and environmental transmission Gamma_x/Gamma_y/Gamma_z = Probability of recovery for animals < 1 year, 1-5 years and >5 years of age, respectively Alpha_x/Alpha_y/Alpha_z = Probability of dying from the disease for animals < 1 year, 1-5 years and >5 years of age, respectively Half_life = Half-life of Cryptosporidium oocysts in the environment Outbreak_size = sum of animals that had been infected until day 70 of the simulation Groups_affected = number of groups that had been infected by the pathogen until day 70 of the simulation Deaths = number of deaths that occurred until day 70 of the simulation Indexcase = first animals infected in the simulationstatic_environmental_spread_only_wet_season.tab100016text/tab-separated-valuesUNF:6:vmL60HBqAzhxLIYFIKD2QA==Table containing parameter combinations used as well as output of the static Cryptosporidium model version including only environmental transmission, for the wet season. Inc_period = incubation period Beta_x = transmission parameter beta for animals < 1 year of age and direct contact transmission Beta_y = transmission parameter beta for animals between 1-5 years of age and direct contact transmission Beta_z = transmission parameter beta for animals >5 years of age and direct contact transmission Beta_env_x = transmission parameter beta for animals < 1 year of age and environmental transmission Beta_env_y = transmission parameter beta for animals between 1-5 years of age and environmental transmission Beta_env_z = transmission parameter beta for animals >5 years of age and environmental transmission Gamma_x/Gamma_y/Gamma_z = Probability of recovery for animals < 1 year, 1-5 years and >5 years of age, respectively Alpha_x/Alpha_y/Alpha_z = Probability of dying from the disease for animals < 1 year, 1-5 years and >5 years of age, respectively Half_life = Half-life of Cryptosporidium oocysts in the environment Outbreak_size = sum of animals that had been infected until day 70 of the simulation Groups_affected = number of groups that had been infected by the pathogen until day 70 of the simulation Deaths = number of deaths that occurred until day 70 of the simulation Indexcase = first animals infected in the simulationStatic_home_range_sizes_dry.tab85text/tab-separated-valuesUNF:6:/xlYKeZZMECTeeMx4tG8JA==Mean home range sizes (in hectare) of 8 groups of Verreaux’s sifakas in the dry season. HR = home range Group = resident group in this home range HR_size = size of the entire home range (95 % kernel) in hectare Core_area = size of the core area (50 % kernel) in hectare Non_core = HR_size – core_area HR_size_mean = mean size of the entire home range (95 % kernel) over the dry / wet season Core_area_mean = mean size of core area (50 % kernel) over the dry / wet season Non_core_mean = HR_size_mean – core_area_meanStatic_home_range_sizes_wet_season.tab85text/tab-separated-valuesUNF:6:rxoIzgQDhTJJ2zqNksCsmg==Mean home range sizes (in hectare) of 8 groups of Verreaux’s sifakas in the wet season. HR = home range Group = resident group in this home range HR_size = size of the entire home range (95 % kernel) in hectare Core_area = size of the core area (50 % kernel) in hectare Non_core = HR_size – core_area HR_size_mean = mean size of the entire home range (95 % kernel) over the dry / wet season Core_area_mean = mean size of core area (50 % kernel) over the dry / wet season Non_core_mean = HR_size_mean – core_area_mean static_social_spread_only_dry_season.tab100016text/tab-separated-valuesUNF:6:hvVz2D4SQu7sOK9z5bEyYA==Table containing parameter combinations used as well as output of the static Cryptosporidium model version including only direct contact transmission, for the dry season. Inc_period = incubation period Beta_x = transmission parameter beta for animals < 1 year of age and direct contact transmission Beta_y = transmission parameter beta for animals between 1-5 years of age and direct contact transmission Beta_z = transmission parameter beta for animals >5 years of age and direct contact transmission Beta_env_x = transmission parameter beta for animals < 1 year of age and environmental transmission Beta_env_y = transmission parameter beta for animals between 1-5 years of age and environmental transmission Beta_env_z = transmission parameter beta for animals >5 years of age and environmental transmission Gamma_x/Gamma_y/Gamma_z = Probability of recovery for animals < 1 year, 1-5 years and >5 years of age, respectively Alpha_x/Alpha_y/Alpha_z = Probability of dying from the disease for animals < 1 year, 1-5 years and >5 years of age, respectively Half_life = Half-life of Cryptosporidium oocysts in the environment Outbreak_size = sum of animals that had been infected until day 70 of the simulation Groups_affected = number of groups that had been infected by the pathogen until day 70 of the simulation Deaths = number of deaths that occurred until day 70 of the simulation Indexcase = first animals infected in the simulationstatic_social_spread_only_wet_season.tab100016text/tab-separated-valuesUNF:6:/k+G+lb8lPVlHlrcNRWlCA==Table containing parameter combinations used as well as output of the static Cryptosporidium model version including only direct contact transmission, for the wet season. Inc_period = incubation period Beta_x = transmission parameter beta for animals < 1 year of age and direct contact transmission Beta_y = transmission parameter beta for animals between 1-5 years of age and direct contact transmission Beta_z = transmission parameter beta for animals >5 years of age and direct contact transmission Beta_env_x = transmission parameter beta for animals < 1 year of age and environmental transmission Beta_env_y = transmission parameter beta for animals between 1-5 years of age and environmental transmission Beta_env_z = transmission parameter beta for animals >5 years of age and environmental transmission Gamma_x/Gamma_y/Gamma_z = Probability of recovery for animals < 1 year, 1-5 years and >5 years of age, respectively Alpha_x/Alpha_y/Alpha_z = Probability of dying from the disease for animals < 1 year, 1-5 years and >5 years of age, respectively Half_life = Half-life of Cryptosporidium oocysts in the environment Outbreak_size = sum of animals that had been infected until day 70 of the simulation Groups_affected = number of groups that had been infected by the pathogen until day 70 of the simulation Deaths = number of deaths that occurred until day 70 of the simulation Indexcase = first animals infected in the 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of pairwise body contact rates (in minutes per hour) between individual Verreaux’s sifakas, for each of 5 two-weekly intervals in the dry season.application/vnd.openxmlformats-officedocument.spreadsheetml.sheet2weekly_BC_matrices_wet_season.xlsxMatrices of pairwise body contact rates (in minutes per hour) between individual Verreaux’s sifakas, for each of 5 two-weekly intervals in the wet season.application/vnd.openxmlformats-officedocument.spreadsheetml.sheetBody_contact_static_dry_season.xlsxMatrix of mean pairwise body contact rates (in minutes per hour) between individual Verreaux’s sifakas, for the dry season. Input for the static network model.application/vnd.openxmlformats-officedocument.spreadsheetml.sheetBody_contact_static_wet_season.xlsxMatrix of mean pairwise body contact rates (in minutes per hour) between individual Verreaux’s sifakas, for the wet season. Input for the static network model.application/vnd.openxmlformats-officedocument.spreadsheetml.sheetrandom_networks_4groups_simulations.RSIR model code used to assess the spread of a hypothetical disease through randomly generated dynamic networks of 4 social groups and their static approximations.type/x-r-syntaxsifaka dynamic model wet season.RR code used to model Cryptosporidium spread through a sifaka population during the wet season, using an SEIR model and dynamic networks. type/x-r-syntaxsifaka model dynamic dry season.RR code used to model Cryptosporidium spread through a sifaka population during the dry season, using an SEIR model and dynamic networks. type/x-r-syntaxsifaka static model dry season.RR code used to model Cryptosporidium spread through a sifaka population during the dry season, using an SEIR model and static networks. type/x-r-syntaxsifaka static model wet season.RR code used to model Cryptosporidium spread through a sifaka population during the wet season, using an SEIR model and static networks. type/x-r-syntax